{ "timestamp": "2026-03-12T02:24:38.904396", "biolink_version": "4.3.6", "data_directory": "single_file_validation", "sources": { "single_validation": { "timestamp": "2026-03-12T02:24:38.662101", "biolink_version": "4.3.6", "files": { "nodes_file": "/home/ubuntu/translator-ingests/src/translator_ingest/../../data/geneticskp/2026-03-12/transform_1f1ad62b/normalization_2025sep1/merged_nodes.jsonl", "edges_file": "/home/ubuntu/translator-ingests/src/translator_ingest/../../data/geneticskp/2026-03-12/transform_1f1ad62b/normalization_2025sep1/merged_edges.jsonl" }, "statistics": { "total_nodes": 28023, "total_edges": 653544, "unique_nodes_in_edges": 0, "missing_nodes_count": 0, "orphaned_nodes_count": 0, "validation_errors": 0, "validation_warnings": 4102, "edge_sample_size": 65354, "node_sample_size": 21144, "note": "Large file - validation performed on random edge sample with matching nodes" }, "validation_status": "PASSED", "issues": { "errors": [], "warnings": [ { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/3 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/4 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/7 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/11 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/16 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/19 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/20 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/46 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/53 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/54 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/83 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/109 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/111 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/113 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/116 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/134 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/136 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/182 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/195 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/229 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/238 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/287 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/290 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/292 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/299 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/308 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/327 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/357 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/366 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/367 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/394 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/413 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/435 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/449 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/451 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/517 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/554 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/562 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/568 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/569 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/585 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/605 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/610 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/624 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/629 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/662 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/673 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/688 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/705 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/723 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/728 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/734 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/736 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/744 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/767 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/772 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/782 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/797 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/808 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/816 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/843 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/873 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/885 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/893 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/899 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/903 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/916 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/918 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/933 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/938 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/948 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/950 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/964 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/973 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/974 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/990 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/995 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1002 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1005 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1013 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1015 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1020 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1024 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1034 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1045 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1046 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1047 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1053 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1058 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1071 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1104 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1119 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1137 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1158 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1163 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1171 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1180 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1187 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1214 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1243 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" } ], "missing_nodes": [], "orphaned_nodes": [], "truncated": true } } }, "summary": { "total_sources": 1, "passed": 1, "failed": 0, "overall_status": "PASSED" } }