{ "timestamp": "2026-03-26T10:13:36.982208", "biolink_version": "4.3.6", "data_directory": "single_file_validation", "sources": { "single_validation": { "timestamp": "2026-03-26T10:13:36.736377", "biolink_version": "4.3.6", "files": { "nodes_file": "/home/ubuntu/translator-ingests/src/translator_ingest/../../data/geneticskp/2026-03-26/transform_1f1ad62b/normalization_2025sep1/merged_nodes.jsonl", "edges_file": "/home/ubuntu/translator-ingests/src/translator_ingest/../../data/geneticskp/2026-03-26/transform_1f1ad62b/normalization_2025sep1/merged_edges.jsonl" }, "statistics": { "total_nodes": 28023, "total_edges": 653544, "unique_nodes_in_edges": 0, "missing_nodes_count": 0, "orphaned_nodes_count": 0, "validation_errors": 0, "validation_warnings": 4026, "edge_sample_size": 65354, "node_sample_size": 21135, "note": "Large file - validation performed on random edge sample with matching nodes" }, "validation_status": "PASSED", "issues": { "errors": [], "warnings": [ { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/13 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/15 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/30 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/37 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/41 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/57 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/74 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/84 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/97 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/112 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/126 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/137 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/182 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/202 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/207 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/219 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/246 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/248 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/255 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/260 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/285 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/304 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/339 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/350 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/417 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/432 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/443 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/445 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/461 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/501 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/502 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/513 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/538 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/593 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/609 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/611 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/613 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/630 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/642 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/646 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/689 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/692 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/701 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/704 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/716 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/733 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/763 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/764 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/839 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/844 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/885 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/897 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/909 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/914 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/955 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/965 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/968 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/993 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/999 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1023 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1031 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1033 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1078 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1104 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1119 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1182 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1190 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1220 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1238 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1245 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1246 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1247 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1248 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1254 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1276 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1299 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1306 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1340 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1373 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1379 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1383 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1399 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1444 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1445 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1455 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1462 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1463 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1483 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1488 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1511 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1539 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1542 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1543 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1547 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1550 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1657 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1659 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1691 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1704 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1719 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" } ], "missing_nodes": [], "orphaned_nodes": [], "truncated": true } } }, "summary": { "total_sources": 1, "passed": 1, "failed": 0, "overall_status": "PASSED" } }