{ "timestamp": "2026-04-07T23:43:22.428104", "biolink_version": "4.3.6", "data_directory": "single_file_validation", "sources": { "single_validation": { "timestamp": "2026-04-07T23:43:22.124590", "biolink_version": "4.3.6", "files": { "nodes_file": "/home/ubuntu/translator-ingests/src/translator_ingest/../../data/geneticskp/2026-04-07/transform_1f1ad62b/normalization_2025sep1/merged_nodes.jsonl", "edges_file": "/home/ubuntu/translator-ingests/src/translator_ingest/../../data/geneticskp/2026-04-07/transform_1f1ad62b/normalization_2025sep1/merged_edges.jsonl" }, "statistics": { "total_nodes": 28023, "total_edges": 653544, "unique_nodes_in_edges": 0, "missing_nodes_count": 0, "orphaned_nodes_count": 0, "validation_errors": 0, "validation_warnings": 4147, "edge_sample_size": 65354, "node_sample_size": 21288, "note": "Large file - validation performed on random edge sample with matching nodes" }, "validation_status": "PASSED", "issues": { "errors": [], "warnings": [ { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/15 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/25 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/40 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/45 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/133 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/139 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/145 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/194 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/196 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/203 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/216 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/217 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/245 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/246 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/250 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/271 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/292 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/336 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/345 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/354 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/378 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/408 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/421 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/426 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/465 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/469 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/486 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/492 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/505 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/510 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/518 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/527 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/555 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/582 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/584 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/590 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/596 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/601 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/604 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/610 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/639 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/643 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/651 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/681 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/712 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/713 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/724 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/760 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/761 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/766 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/803 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/807 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/808 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/820 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/836 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/837 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/838 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/847 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/851 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/861 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/864 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/923 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/928 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/953 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/961 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/995 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1040 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1070 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1094 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1097 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1128 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1197 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1223 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1234 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1239 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1273 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1289 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1321 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1326 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1336 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1341 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1343 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1344 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1371 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1400 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1435 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1442 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1450 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1464 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1466 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1473 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1502 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1549 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1592 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1634 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1656 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1670 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1678 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1682 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1685 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" } ], "missing_nodes": [], "orphaned_nodes": [], "truncated": true } } }, "summary": { "total_sources": 1, "passed": 1, "failed": 0, "overall_status": "PASSED" } }