{ "timestamp": "2026-04-21T00:57:43.033420", "biolink_version": "4.3.6", "data_directory": "single_file_validation", "sources": { "single_validation": { "timestamp": "2026-04-21T00:57:42.749897", "biolink_version": "4.3.6", "files": { "nodes_file": "/home/ubuntu/translator-ingests/src/translator_ingest/../../data/geneticskp/2026-04-21/transform_1f1ad62b/normalization_2025sep1/merged_nodes.jsonl", "edges_file": "/home/ubuntu/translator-ingests/src/translator_ingest/../../data/geneticskp/2026-04-21/transform_1f1ad62b/normalization_2025sep1/merged_edges.jsonl" }, "statistics": { "total_nodes": 28023, "total_edges": 653544, "unique_nodes_in_edges": 0, "missing_nodes_count": 0, "orphaned_nodes_count": 0, "validation_errors": 0, "validation_warnings": 4024, "edge_sample_size": 65354, "node_sample_size": 21175, "note": "Large file - validation performed on random edge sample with matching nodes" }, "validation_status": "PASSED", "issues": { "errors": [], "warnings": [ { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/39 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/57 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/60 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/80 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/101 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/102 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/103 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/105 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/117 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/125 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/151 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/160 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/168 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/210 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/211 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/216 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/223 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/230 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/231 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/271 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/272 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/285 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/294 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/322 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/334 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/358 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/380 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/408 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/412 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/414 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/433 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/453 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/508 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/509 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/573 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/576 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/584 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/596 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/609 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/618 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/631 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/645 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/686 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/690 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/720 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/724 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/733 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/736 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/812 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/841 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/860 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/864 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/877 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/903 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/904 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/912 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/913 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/936 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/976 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1009 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1013 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1066 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1071 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1091 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1111 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1127 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1145 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1147 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1153 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1158 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1174 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1185 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1198 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1202 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1222 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1297 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1311 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1335 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1341 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1361 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1380 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1421 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1445 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1501 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1526 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1558 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1570 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1589 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1603 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1622 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1634 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1652 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1659 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1665 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1693 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1707 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1716 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1773 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1813 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1822 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" } ], "missing_nodes": [], "orphaned_nodes": [], "truncated": true } } }, "summary": { "total_sources": 1, "passed": 1, "failed": 0, "overall_status": "PASSED" } }