{ "timestamp": "2026-04-22T03:18:49.460236", "biolink_version": "4.3.6", "data_directory": "single_file_validation", "sources": { "single_validation": { "timestamp": "2026-04-22T03:18:49.208573", "biolink_version": "4.3.6", "files": { "nodes_file": "/home/ubuntu/translator-ingests/src/translator_ingest/../../data/geneticskp/2026-04-22/transform_1f1ad62b/normalization_2025sep1/merged_nodes.jsonl", "edges_file": "/home/ubuntu/translator-ingests/src/translator_ingest/../../data/geneticskp/2026-04-22/transform_1f1ad62b/normalization_2025sep1/merged_edges.jsonl" }, "statistics": { "total_nodes": 28023, "total_edges": 653544, "unique_nodes_in_edges": 0, "missing_nodes_count": 0, "orphaned_nodes_count": 0, "validation_errors": 0, "validation_warnings": 4143, "edge_sample_size": 65354, "node_sample_size": 21146, "note": "Large file - validation performed on random edge sample with matching nodes" }, "validation_status": "PASSED", "issues": { "errors": [], "warnings": [ { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/2 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/3 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/36 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/42 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/62 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/64 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/77 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/135 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/143 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/199 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/205 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/206 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/216 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/233 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/244 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/275 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/285 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/317 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/353 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/372 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/380 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/395 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/418 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/428 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/452 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/456 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/457 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/466 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/478 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/480 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/516 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/517 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/571 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/580 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/585 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/609 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/612 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/622 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/626 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/645 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/656 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/662 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/664 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/683 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/697 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/702 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/704 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/729 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/748 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/754 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/756 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/762 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/764 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/776 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/794 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/798 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/839 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/853 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/860 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/880 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/892 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/915 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/943 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/952 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/953 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/999 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1009 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1028 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1033 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1041 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:SmallMolecule', 'biolink:MolecularEntity', 'biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1069 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1070 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1176 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1212 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1215 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1258 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1319 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1321 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1339 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1355 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ClinicalAttribute', 'biolink:Attribute', 'biolink:OntologyClass', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1359 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1361 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1451 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Protein', 'biolink:GeneProductMixin', 'biolink:Polypeptide', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:BiologicalEntity', 'biolink:ThingWithTaxon', 'biolink:NamedThing', 'biolink:GeneOrGeneProduct', 'biolink:MacromolecularMachineMixin']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1466 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1467 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1481 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1495 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1504 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1516 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1517 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1519 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1543 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1546 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1617 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1652 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1672 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1680 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:InformationContentEntity', 'biolink:NamedThing']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1682 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:ChemicalEntity', 'biolink:PhysicalEssence', 'biolink:ChemicalOrDrugOrTreatment', 'biolink:ChemicalEntityOrGeneOrGeneProduct', 'biolink:ChemicalEntityOrProteinOrPolypeptide', 'biolink:NamedThing', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1696 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" }, { "type": "biolink-model validation", "severity": "WARN", "message": "Edge at /edges/1698 violates range constraint: predicate 'biolink:gene_associated_with_condition' expects range 'disease or phenotypic feature' but object has categories ['biolink:Procedure', 'biolink:ActivityAndBehavior', 'biolink:NamedThing', 'biolink:Occurrent', 'biolink:PhysicalEssenceOrOccurrent']", "instance_path": "unknown" } ], "missing_nodes": [], "orphaned_nodes": [], "truncated": true } } }, "summary": { "total_sources": 1, "passed": 1, "failed": 0, "overall_status": "PASSED" } }