{
"@id": "https://stars.renci.org/var/translator/releases/dgidb/2025_12_09/",
"@type": "sc:Dataset",
"name": "dgidb",
"description": "A knowledge graph built for the NCATS Biomedical Data Translator project using Translator-Ingests, Biolink Model, and Node Normalizer.",
"license": "MIT",
"url": "https://stars.renci.org/var/translator/releases/dgidb/2025_12_09/",
"version": "2025_12_09",
"dateCreated": "2025_12_09",
"biolinkVersion": "4.3.5",
"babelVersion": "2025sep1",
"distribution": [
{
"@id": "dgidb.tar.xz",
"@type": "cr:FileObject",
"contentUrl": "dgidb.tar.xz",
"encodingFormat": "application/x-xz",
"description": "Compressed tar archive containing the KGX files: nodes.jsonl and edges.jsonl"
}
],
"isBasedOn": [
{
"id": "dgidb",
"name": "Drug-Gene Interaction Database (DGIdb) Reference Ingest Guide",
"description": "The Drug-Gene Interaction Database (DGIdb) streamlines the search for druggable therapeutic targets through the aggregation, categorization, and curation of drug and gene data from publications and expert resources.",
"license": {
"terms_of_use_url": "https://dgidb.org/about/overview/data-accessibility",
"terms_of_use_description": "According to the webpage on 'Data Accessibility', '[t]he data used in DGIdb is all open access and where possible made available as raw data dumps in the downloads section.' However, according to the 2024 paper, DGIdb 'aggregate[s] content from...sources with varying content licenses'; and the DGIdb downloads page says 'some of the data sources we import may have restrictions that prevent us from redistributing them'."
},
"url": [
"Downloads page: https://dgidb.org/downloads"
],
"version": "2024-12"
}
],
"schema": {
"nodes": [
{
"category": [
"biolink:SmallMolecule"
],
"count": 4476,
"id_prefixes": {
"CHEBI": 1894,
"PUBCHEM.COMPOUND": 1800,
"UNII": 754,
"CHEMBL.COMPOUND": 28
},
"attributes": {
"name": 4476,
"equivalent_identifiers": 4476,
"information_content": 1859
}
},
{
"category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 3667,
"id_prefixes": {
"NCBIGene": 3667
},
"attributes": {
"name": 3667,
"equivalent_identifiers": 3667,
"information_content": 3666
}
},
{
"category": [
"biolink:ChemicalEntity"
],
"count": 692,
"id_prefixes": {
"CHEMBL.COMPOUND": 502,
"DRUGBANK": 98,
"UNII": 44,
"CHEBI": 17,
"RXCUI": 15,
"UMLS": 13,
"MESH": 3
},
"attributes": {
"name": 692,
"equivalent_identifiers": 692,
"information_content": 13
}
},
{
"category": [
"biolink:MolecularMixture"
],
"count": 474,
"id_prefixes": {
"PUBCHEM.COMPOUND": 276,
"UNII": 115,
"CHEBI": 81,
"CHEMBL.COMPOUND": 2
},
"attributes": {
"name": 474,
"equivalent_identifiers": 474,
"information_content": 79
}
},
{
"category": [
"biolink:Gene"
],
"count": 167,
"id_prefixes": {
"NCBIGene": 139,
"HGNC": 28
},
"attributes": {
"name": 167,
"equivalent_identifiers": 167,
"information_content": 41
}
},
{
"category": [
"biolink:Drug",
"biolink:SmallMolecule"
],
"count": 1770,
"id_prefixes": {
"CHEBI": 1598,
"UNII": 156,
"PUBCHEM.COMPOUND": 16
},
"attributes": {
"name": 1770,
"equivalent_identifiers": 1770,
"information_content": 1237
}
},
{
"category": [
"biolink:Drug"
],
"count": 321,
"id_prefixes": {
"UNII": 197,
"CHEBI": 58,
"DRUGBANK": 47,
"UMLS": 6,
"CHEMBL.COMPOUND": 5,
"PUBCHEM.COMPOUND": 5,
"RXCUI": 3
},
"attributes": {
"name": 321,
"equivalent_identifiers": 321,
"information_content": 48
}
},
{
"category": [
"biolink:MolecularMixture",
"biolink:SmallMolecule"
],
"count": 32,
"id_prefixes": {
"CHEBI": 25,
"UNII": 6,
"PUBCHEM.COMPOUND": 1
},
"attributes": {
"name": 32,
"equivalent_identifiers": 32,
"information_content": 20
}
},
{
"category": [
"biolink:Protein"
],
"count": 92,
"id_prefixes": {
"UMLS": 92
},
"attributes": {
"name": 92,
"equivalent_identifiers": 92
}
}
],
"nodes_summary": {
"total_count": 11691,
"id_prefixes": {
"NCBIGene": 3806,
"CHEBI": 3673,
"PUBCHEM.COMPOUND": 2098,
"UNII": 1272,
"CHEMBL.COMPOUND": 537,
"DRUGBANK": 145,
"UMLS": 111,
"HGNC": 28,
"RXCUI": 18,
"MESH": 3
},
"attributes": {
"name": 11691,
"equivalent_identifiers": 11691,
"information_content": 6963
}
},
"edges": [
{
"subject_category": [
"biolink:SmallMolecule"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 13200,
"primary_knowledge_sources": {
"infores:dgidb": 13200
},
"qualifiers": {},
"attributes": {
"id": 13200,
"category": 13200,
"knowledge_level": 13200,
"agent_type": 13200,
"dgidb_interaction_score": 13200,
"dgidb_evidence_score": 13200,
"original_subject": 13200,
"original_object": 13200,
"publications": 515
},
"subject_id_prefixes": {
"CHEBI": 6874,
"PUBCHEM.COMPOUND": 4882,
"UNII": 1320,
"CHEMBL.COMPOUND": 124
},
"object_id_prefixes": {
"NCBIGene": 13200
}
},
{
"subject_category": [
"biolink:SmallMolecule"
],
"predicate": "biolink:affects",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 2132,
"primary_knowledge_sources": {
"infores:dgidb": 2132
},
"qualifiers": {
"causal_mechanism_qualifier": 2132,
"object_aspect_qualifier": 2130,
"object_direction_qualifier": 2062,
"qualified_predicate": 2062
},
"attributes": {
"id": 2132,
"category": 2132,
"knowledge_level": 2132,
"agent_type": 2132,
"original_subject": 2132,
"original_object": 2132,
"dgidb_interaction_score": 1780,
"dgidb_evidence_score": 1780,
"publications": 31
},
"subject_id_prefixes": {
"CHEBI": 1154,
"UNII": 854,
"PUBCHEM.COMPOUND": 120,
"CHEMBL.COMPOUND": 4
},
"object_id_prefixes": {
"NCBIGene": 2132
}
},
{
"subject_category": [
"biolink:SmallMolecule"
],
"predicate": "biolink:directly_physically_interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 1871,
"primary_knowledge_sources": {
"infores:dgidb": 1871
},
"qualifiers": {
"causal_mechanism_qualifier": 2
},
"attributes": {
"id": 1871,
"category": 1871,
"knowledge_level": 1871,
"agent_type": 1871,
"original_subject": 1871,
"original_object": 1871,
"publications": 29,
"dgidb_interaction_score": 1,
"dgidb_evidence_score": 1
},
"subject_id_prefixes": {
"CHEBI": 968,
"UNII": 781,
"PUBCHEM.COMPOUND": 118,
"CHEMBL.COMPOUND": 4
},
"object_id_prefixes": {
"NCBIGene": 1871
}
},
{
"subject_category": [
"biolink:ChemicalEntity"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 944,
"primary_knowledge_sources": {
"infores:dgidb": 944
},
"qualifiers": {},
"attributes": {
"id": 944,
"category": 944,
"knowledge_level": 944,
"agent_type": 944,
"dgidb_interaction_score": 944,
"dgidb_evidence_score": 944,
"original_subject": 944,
"original_object": 944,
"publications": 149
},
"subject_id_prefixes": {
"CHEMBL.COMPOUND": 508,
"DRUGBANK": 162,
"CHEBI": 86,
"UNII": 63,
"MESH": 61,
"RXCUI": 37,
"UMLS": 27
},
"object_id_prefixes": {
"NCBIGene": 944
}
},
{
"subject_category": [
"biolink:MolecularMixture"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 1359,
"primary_knowledge_sources": {
"infores:dgidb": 1359
},
"qualifiers": {},
"attributes": {
"id": 1359,
"category": 1359,
"knowledge_level": 1359,
"agent_type": 1359,
"dgidb_interaction_score": 1359,
"dgidb_evidence_score": 1359,
"original_subject": 1359,
"original_object": 1359,
"publications": 43
},
"subject_id_prefixes": {
"PUBCHEM.COMPOUND": 866,
"CHEBI": 269,
"UNII": 218,
"CHEMBL.COMPOUND": 6
},
"object_id_prefixes": {
"NCBIGene": 1359
}
},
{
"subject_category": [
"biolink:MolecularMixture"
],
"predicate": "biolink:affects",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 98,
"primary_knowledge_sources": {
"infores:dgidb": 98
},
"qualifiers": {
"object_aspect_qualifier": 98,
"object_direction_qualifier": 98,
"causal_mechanism_qualifier": 98,
"qualified_predicate": 98
},
"attributes": {
"id": 98,
"category": 98,
"knowledge_level": 98,
"agent_type": 98,
"original_subject": 98,
"original_object": 98,
"dgidb_interaction_score": 83,
"dgidb_evidence_score": 83,
"publications": 4
},
"subject_id_prefixes": {
"UNII": 59,
"CHEBI": 24,
"PUBCHEM.COMPOUND": 15
},
"object_id_prefixes": {
"NCBIGene": 98
}
},
{
"subject_category": [
"biolink:MolecularMixture"
],
"predicate": "biolink:directly_physically_interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 98,
"primary_knowledge_sources": {
"infores:dgidb": 98
},
"qualifiers": {},
"attributes": {
"id": 98,
"category": 98,
"knowledge_level": 98,
"agent_type": 98,
"original_subject": 98,
"original_object": 98,
"publications": 4
},
"subject_id_prefixes": {
"UNII": 59,
"CHEBI": 24,
"PUBCHEM.COMPOUND": 15
},
"object_id_prefixes": {
"NCBIGene": 98
}
},
{
"subject_category": [
"biolink:SmallMolecule"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene"
],
"count": 240,
"primary_knowledge_sources": {
"infores:dgidb": 240
},
"qualifiers": {},
"attributes": {
"id": 240,
"category": 240,
"knowledge_level": 240,
"agent_type": 240,
"dgidb_interaction_score": 240,
"dgidb_evidence_score": 240,
"original_subject": 240,
"original_object": 240,
"publications": 5
},
"subject_id_prefixes": {
"PUBCHEM.COMPOUND": 125,
"CHEBI": 97,
"UNII": 17,
"CHEMBL.COMPOUND": 1
},
"object_id_prefixes": {
"NCBIGene": 239,
"HGNC": 1
}
},
{
"subject_category": [
"biolink:Drug",
"biolink:SmallMolecule"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 15691,
"primary_knowledge_sources": {
"infores:dgidb": 15691
},
"qualifiers": {},
"attributes": {
"id": 15691,
"category": 15691,
"knowledge_level": 15691,
"agent_type": 15691,
"dgidb_interaction_score": 15691,
"dgidb_evidence_score": 15691,
"original_subject": 15691,
"original_object": 15691,
"publications": 2517
},
"subject_id_prefixes": {
"CHEBI": 15126,
"UNII": 435,
"PUBCHEM.COMPOUND": 130
},
"object_id_prefixes": {
"NCBIGene": 15691
}
},
{
"subject_category": [
"biolink:Drug",
"biolink:SmallMolecule"
],
"predicate": "biolink:affects",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 6864,
"primary_knowledge_sources": {
"infores:dgidb": 6864
},
"qualifiers": {
"object_aspect_qualifier": 6864,
"causal_mechanism_qualifier": 6863,
"object_direction_qualifier": 6679,
"qualified_predicate": 6679
},
"attributes": {
"id": 6864,
"category": 6864,
"knowledge_level": 6864,
"agent_type": 6864,
"original_subject": 6864,
"original_object": 6864,
"dgidb_interaction_score": 5040,
"dgidb_evidence_score": 5040,
"publications": 183
},
"subject_id_prefixes": {
"CHEBI": 6359,
"UNII": 456,
"PUBCHEM.COMPOUND": 49
},
"object_id_prefixes": {
"NCBIGene": 6864
}
},
{
"subject_category": [
"biolink:Drug",
"biolink:SmallMolecule"
],
"predicate": "biolink:directly_physically_interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 5746,
"primary_knowledge_sources": {
"infores:dgidb": 5746
},
"qualifiers": {
"causal_mechanism_qualifier": 24
},
"attributes": {
"id": 5746,
"category": 5746,
"knowledge_level": 5746,
"agent_type": 5746,
"original_subject": 5746,
"original_object": 5746,
"publications": 183,
"dgidb_interaction_score": 10,
"dgidb_evidence_score": 10
},
"subject_id_prefixes": {
"CHEBI": 5320,
"UNII": 377,
"PUBCHEM.COMPOUND": 49
},
"object_id_prefixes": {
"NCBIGene": 5746
}
},
{
"subject_category": [
"biolink:ChemicalEntity"
],
"predicate": "biolink:directly_physically_interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 723,
"primary_knowledge_sources": {
"infores:dgidb": 723
},
"qualifiers": {
"causal_mechanism_qualifier": 60
},
"attributes": {
"id": 723,
"category": 723,
"knowledge_level": 723,
"agent_type": 723,
"original_subject": 723,
"original_object": 723,
"dgidb_interaction_score": 50,
"dgidb_evidence_score": 50,
"publications": 22
},
"subject_id_prefixes": {
"CHEMBL.COMPOUND": 555,
"CHEBI": 86,
"DRUGBANK": 40,
"UNII": 31,
"RXCUI": 6,
"MESH": 3,
"UMLS": 2
},
"object_id_prefixes": {
"NCBIGene": 723
}
},
{
"subject_category": [
"biolink:Drug"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 1541,
"primary_knowledge_sources": {
"infores:dgidb": 1541
},
"qualifiers": {},
"attributes": {
"id": 1541,
"category": 1541,
"knowledge_level": 1541,
"agent_type": 1541,
"dgidb_interaction_score": 1541,
"dgidb_evidence_score": 1541,
"original_subject": 1541,
"original_object": 1541,
"publications": 197
},
"subject_id_prefixes": {
"UNII": 827,
"CHEBI": 551,
"DRUGBANK": 94,
"UMLS": 25,
"PUBCHEM.COMPOUND": 22,
"CHEMBL.COMPOUND": 20,
"RXCUI": 2
},
"object_id_prefixes": {
"NCBIGene": 1541
}
},
{
"subject_category": [
"biolink:ChemicalEntity"
],
"predicate": "biolink:affects",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 697,
"primary_knowledge_sources": {
"infores:dgidb": 697
},
"qualifiers": {
"causal_mechanism_qualifier": 697,
"object_aspect_qualifier": 696,
"object_direction_qualifier": 679,
"qualified_predicate": 679
},
"attributes": {
"id": 697,
"category": 697,
"knowledge_level": 697,
"agent_type": 697,
"original_subject": 697,
"original_object": 697,
"dgidb_interaction_score": 607,
"dgidb_evidence_score": 607,
"publications": 24
},
"subject_id_prefixes": {
"CHEMBL.COMPOUND": 528,
"CHEBI": 86,
"DRUGBANK": 40,
"UNII": 33,
"RXCUI": 5,
"MESH": 3,
"UMLS": 2
},
"object_id_prefixes": {
"NCBIGene": 697
}
},
{
"subject_category": [
"biolink:Drug"
],
"predicate": "biolink:affects",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 541,
"primary_knowledge_sources": {
"infores:dgidb": 541
},
"qualifiers": {
"object_aspect_qualifier": 541,
"causal_mechanism_qualifier": 535,
"object_direction_qualifier": 523,
"qualified_predicate": 523
},
"attributes": {
"id": 541,
"category": 541,
"knowledge_level": 541,
"agent_type": 541,
"original_subject": 541,
"original_object": 541,
"dgidb_interaction_score": 347,
"dgidb_evidence_score": 347,
"publications": 13
},
"subject_id_prefixes": {
"UNII": 373,
"CHEBI": 107,
"DRUGBANK": 35,
"PUBCHEM.COMPOUND": 14,
"CHEMBL.COMPOUND": 6,
"UMLS": 5,
"RXCUI": 1
},
"object_id_prefixes": {
"NCBIGene": 541
}
},
{
"subject_category": [
"biolink:Drug"
],
"predicate": "biolink:directly_physically_interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 523,
"primary_knowledge_sources": {
"infores:dgidb": 523
},
"qualifiers": {
"causal_mechanism_qualifier": 56
},
"attributes": {
"id": 523,
"category": 523,
"knowledge_level": 523,
"agent_type": 523,
"original_subject": 523,
"original_object": 523,
"dgidb_interaction_score": 36,
"dgidb_evidence_score": 36,
"publications": 13
},
"subject_id_prefixes": {
"UNII": 363,
"CHEBI": 103,
"DRUGBANK": 33,
"PUBCHEM.COMPOUND": 11,
"CHEMBL.COMPOUND": 6,
"UMLS": 5,
"RXCUI": 2
},
"object_id_prefixes": {
"NCBIGene": 523
}
},
{
"subject_category": [
"biolink:Drug",
"biolink:SmallMolecule"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene"
],
"count": 200,
"primary_knowledge_sources": {
"infores:dgidb": 200
},
"qualifiers": {},
"attributes": {
"id": 200,
"category": 200,
"knowledge_level": 200,
"agent_type": 200,
"dgidb_interaction_score": 200,
"dgidb_evidence_score": 200,
"original_subject": 200,
"original_object": 200,
"publications": 23
},
"subject_id_prefixes": {
"CHEBI": 190,
"UNII": 8,
"PUBCHEM.COMPOUND": 2
},
"object_id_prefixes": {
"NCBIGene": 198,
"HGNC": 2
}
},
{
"subject_category": [
"biolink:MolecularMixture"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene"
],
"count": 3,
"primary_knowledge_sources": {
"infores:dgidb": 3
},
"qualifiers": {},
"attributes": {
"id": 3,
"category": 3,
"knowledge_level": 3,
"agent_type": 3,
"dgidb_interaction_score": 3,
"dgidb_evidence_score": 3,
"original_subject": 3,
"original_object": 3,
"publications": 1
},
"subject_id_prefixes": {
"PUBCHEM.COMPOUND": 2,
"UNII": 1
},
"object_id_prefixes": {
"NCBIGene": 3
}
},
{
"subject_category": [
"biolink:MolecularMixture",
"biolink:SmallMolecule"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 85,
"primary_knowledge_sources": {
"infores:dgidb": 85
},
"qualifiers": {},
"attributes": {
"id": 85,
"category": 85,
"knowledge_level": 85,
"agent_type": 85,
"dgidb_interaction_score": 85,
"dgidb_evidence_score": 85,
"original_subject": 85,
"original_object": 85,
"publications": 5
},
"subject_id_prefixes": {
"CHEBI": 65,
"UNII": 15,
"PUBCHEM.COMPOUND": 5
},
"object_id_prefixes": {
"NCBIGene": 85
}
},
{
"subject_category": [
"biolink:ChemicalEntity"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene"
],
"count": 6,
"primary_knowledge_sources": {
"infores:dgidb": 6
},
"qualifiers": {},
"attributes": {
"id": 6,
"category": 6,
"knowledge_level": 6,
"agent_type": 6,
"dgidb_interaction_score": 6,
"dgidb_evidence_score": 6,
"original_subject": 6,
"original_object": 6
},
"subject_id_prefixes": {
"CHEMBL.COMPOUND": 3,
"CHEBI": 2,
"UNII": 1
},
"object_id_prefixes": {
"NCBIGene": 5,
"HGNC": 1
}
},
{
"subject_category": [
"biolink:SmallMolecule"
],
"predicate": "biolink:affects",
"object_category": [
"biolink:Gene"
],
"count": 76,
"primary_knowledge_sources": {
"infores:dgidb": 76
},
"qualifiers": {
"object_aspect_qualifier": 76,
"causal_mechanism_qualifier": 76,
"object_direction_qualifier": 74,
"qualified_predicate": 74
},
"attributes": {
"id": 76,
"category": 76,
"knowledge_level": 76,
"agent_type": 76,
"original_subject": 76,
"original_object": 76,
"dgidb_interaction_score": 67,
"dgidb_evidence_score": 67
},
"subject_id_prefixes": {
"CHEBI": 49,
"UNII": 19,
"PUBCHEM.COMPOUND": 7,
"CHEMBL.COMPOUND": 1
},
"object_id_prefixes": {
"NCBIGene": 62,
"HGNC": 14
}
},
{
"subject_category": [
"biolink:SmallMolecule"
],
"predicate": "biolink:directly_physically_interacts_with",
"object_category": [
"biolink:Gene"
],
"count": 68,
"primary_knowledge_sources": {
"infores:dgidb": 68
},
"qualifiers": {},
"attributes": {
"id": 68,
"category": 68,
"knowledge_level": 68,
"agent_type": 68,
"original_subject": 68,
"original_object": 68
},
"subject_id_prefixes": {
"CHEBI": 43,
"UNII": 17,
"PUBCHEM.COMPOUND": 7,
"CHEMBL.COMPOUND": 1
},
"object_id_prefixes": {
"NCBIGene": 55,
"HGNC": 13
}
},
{
"subject_category": [
"biolink:ChemicalEntity"
],
"predicate": "biolink:affects",
"object_category": [
"biolink:Gene"
],
"count": 18,
"primary_knowledge_sources": {
"infores:dgidb": 18
},
"qualifiers": {
"object_aspect_qualifier": 18,
"causal_mechanism_qualifier": 18,
"object_direction_qualifier": 17,
"qualified_predicate": 17
},
"attributes": {
"id": 18,
"category": 18,
"knowledge_level": 18,
"agent_type": 18,
"original_subject": 18,
"original_object": 18,
"dgidb_interaction_score": 17,
"dgidb_evidence_score": 17
},
"subject_id_prefixes": {
"CHEMBL.COMPOUND": 17,
"UNII": 1
},
"object_id_prefixes": {
"HGNC": 11,
"NCBIGene": 7
}
},
{
"subject_category": [
"biolink:ChemicalEntity"
],
"predicate": "biolink:directly_physically_interacts_with",
"object_category": [
"biolink:Gene"
],
"count": 16,
"primary_knowledge_sources": {
"infores:dgidb": 16
},
"qualifiers": {},
"attributes": {
"id": 16,
"category": 16,
"knowledge_level": 16,
"agent_type": 16,
"original_subject": 16,
"original_object": 16
},
"subject_id_prefixes": {
"CHEMBL.COMPOUND": 15,
"UNII": 1
},
"object_id_prefixes": {
"HGNC": 11,
"NCBIGene": 5
}
},
{
"subject_category": [
"biolink:MolecularMixture"
],
"predicate": "biolink:affects",
"object_category": [
"biolink:Gene"
],
"count": 3,
"primary_knowledge_sources": {
"infores:dgidb": 3
},
"qualifiers": {
"object_aspect_qualifier": 3,
"object_direction_qualifier": 3,
"causal_mechanism_qualifier": 3,
"qualified_predicate": 3
},
"attributes": {
"id": 3,
"category": 3,
"knowledge_level": 3,
"agent_type": 3,
"original_subject": 3,
"original_object": 3,
"dgidb_interaction_score": 2,
"dgidb_evidence_score": 2
},
"subject_id_prefixes": {
"CHEBI": 2,
"UNII": 1
},
"object_id_prefixes": {
"NCBIGene": 2,
"HGNC": 1
}
},
{
"subject_category": [
"biolink:MolecularMixture"
],
"predicate": "biolink:directly_physically_interacts_with",
"object_category": [
"biolink:Gene"
],
"count": 3,
"primary_knowledge_sources": {
"infores:dgidb": 3
},
"qualifiers": {},
"attributes": {
"id": 3,
"category": 3,
"knowledge_level": 3,
"agent_type": 3,
"original_subject": 3,
"original_object": 3
},
"subject_id_prefixes": {
"CHEBI": 2,
"UNII": 1
},
"object_id_prefixes": {
"NCBIGene": 2,
"HGNC": 1
}
},
{
"subject_category": [
"biolink:Protein"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 100,
"primary_knowledge_sources": {
"infores:dgidb": 100
},
"qualifiers": {},
"attributes": {
"id": 100,
"category": 100,
"knowledge_level": 100,
"agent_type": 100,
"dgidb_interaction_score": 100,
"dgidb_evidence_score": 100,
"original_subject": 100,
"original_object": 100,
"publications": 47
},
"subject_id_prefixes": {
"UMLS": 100
},
"object_id_prefixes": {
"NCBIGene": 100
}
},
{
"subject_category": [
"biolink:Protein"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene"
],
"count": 3,
"primary_knowledge_sources": {
"infores:dgidb": 3
},
"qualifiers": {},
"attributes": {
"id": 3,
"category": 3,
"knowledge_level": 3,
"agent_type": 3,
"dgidb_interaction_score": 3,
"dgidb_evidence_score": 3,
"original_subject": 3,
"original_object": 3,
"publications": 2
},
"subject_id_prefixes": {
"UMLS": 3
},
"object_id_prefixes": {
"NCBIGene": 3
}
},
{
"subject_category": [
"biolink:Protein"
],
"predicate": "biolink:affects",
"object_category": [
"biolink:Gene"
],
"count": 8,
"primary_knowledge_sources": {
"infores:dgidb": 8
},
"qualifiers": {
"object_aspect_qualifier": 8,
"causal_mechanism_qualifier": 8,
"object_direction_qualifier": 7,
"qualified_predicate": 7
},
"attributes": {
"id": 8,
"category": 8,
"knowledge_level": 8,
"agent_type": 8,
"original_subject": 8,
"original_object": 8,
"dgidb_interaction_score": 7,
"dgidb_evidence_score": 7
},
"subject_id_prefixes": {
"UMLS": 8
},
"object_id_prefixes": {
"HGNC": 6,
"NCBIGene": 2
}
},
{
"subject_category": [
"biolink:Protein"
],
"predicate": "biolink:directly_physically_interacts_with",
"object_category": [
"biolink:Gene"
],
"count": 7,
"primary_knowledge_sources": {
"infores:dgidb": 7
},
"qualifiers": {},
"attributes": {
"id": 7,
"category": 7,
"knowledge_level": 7,
"agent_type": 7,
"original_subject": 7,
"original_object": 7
},
"subject_id_prefixes": {
"UMLS": 7
},
"object_id_prefixes": {
"HGNC": 6,
"NCBIGene": 1
}
},
{
"subject_category": [
"biolink:Protein"
],
"predicate": "biolink:affects",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 80,
"primary_knowledge_sources": {
"infores:dgidb": 80
},
"qualifiers": {
"object_aspect_qualifier": 80,
"causal_mechanism_qualifier": 80,
"object_direction_qualifier": 78,
"qualified_predicate": 78
},
"attributes": {
"id": 80,
"category": 80,
"knowledge_level": 80,
"agent_type": 80,
"original_subject": 80,
"original_object": 80,
"dgidb_interaction_score": 63,
"dgidb_evidence_score": 63
},
"subject_id_prefixes": {
"UMLS": 80
},
"object_id_prefixes": {
"NCBIGene": 80
}
},
{
"subject_category": [
"biolink:Protein"
],
"predicate": "biolink:directly_physically_interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 67,
"primary_knowledge_sources": {
"infores:dgidb": 67
},
"qualifiers": {
"causal_mechanism_qualifier": 5
},
"attributes": {
"id": 67,
"category": 67,
"knowledge_level": 67,
"agent_type": 67,
"original_subject": 67,
"original_object": 67,
"dgidb_interaction_score": 4,
"dgidb_evidence_score": 4
},
"subject_id_prefixes": {
"UMLS": 67
},
"object_id_prefixes": {
"NCBIGene": 67
}
},
{
"subject_category": [
"biolink:Gene",
"biolink:Protein"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 1,
"primary_knowledge_sources": {
"infores:dgidb": 1
},
"qualifiers": {},
"attributes": {
"id": 1,
"category": 1,
"knowledge_level": 1,
"agent_type": 1,
"dgidb_interaction_score": 1,
"dgidb_evidence_score": 1,
"original_subject": 1,
"original_object": 1
},
"subject_id_prefixes": {
"NCBIGene": 1
},
"object_id_prefixes": {
"NCBIGene": 1
}
},
{
"subject_category": [
"biolink:Drug",
"biolink:SmallMolecule"
],
"predicate": "biolink:affects",
"object_category": [
"biolink:Gene"
],
"count": 285,
"primary_knowledge_sources": {
"infores:dgidb": 285
},
"qualifiers": {
"object_aspect_qualifier": 285,
"causal_mechanism_qualifier": 285,
"object_direction_qualifier": 279,
"qualified_predicate": 279
},
"attributes": {
"id": 285,
"category": 285,
"knowledge_level": 285,
"agent_type": 285,
"original_subject": 285,
"original_object": 285,
"dgidb_interaction_score": 279,
"dgidb_evidence_score": 279
},
"subject_id_prefixes": {
"CHEBI": 265,
"UNII": 19,
"PUBCHEM.COMPOUND": 1
},
"object_id_prefixes": {
"NCBIGene": 191,
"HGNC": 94
}
},
{
"subject_category": [
"biolink:Drug",
"biolink:SmallMolecule"
],
"predicate": "biolink:directly_physically_interacts_with",
"object_category": [
"biolink:Gene"
],
"count": 255,
"primary_knowledge_sources": {
"infores:dgidb": 255
},
"qualifiers": {},
"attributes": {
"id": 255,
"category": 255,
"knowledge_level": 255,
"agent_type": 255,
"original_subject": 255,
"original_object": 255
},
"subject_id_prefixes": {
"CHEBI": 238,
"UNII": 16,
"PUBCHEM.COMPOUND": 1
},
"object_id_prefixes": {
"NCBIGene": 164,
"HGNC": 91
}
},
{
"subject_category": [
"biolink:MolecularMixture",
"biolink:SmallMolecule"
],
"predicate": "biolink:affects",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 38,
"primary_knowledge_sources": {
"infores:dgidb": 38
},
"qualifiers": {
"object_aspect_qualifier": 38,
"object_direction_qualifier": 38,
"causal_mechanism_qualifier": 38,
"qualified_predicate": 38
},
"attributes": {
"id": 38,
"category": 38,
"knowledge_level": 38,
"agent_type": 38,
"original_subject": 38,
"original_object": 38,
"dgidb_interaction_score": 33,
"dgidb_evidence_score": 33
},
"subject_id_prefixes": {
"CHEBI": 33,
"UNII": 5
},
"object_id_prefixes": {
"NCBIGene": 38
}
},
{
"subject_category": [
"biolink:MolecularMixture",
"biolink:SmallMolecule"
],
"predicate": "biolink:directly_physically_interacts_with",
"object_category": [
"biolink:Gene",
"biolink:Protein"
],
"count": 37,
"primary_knowledge_sources": {
"infores:dgidb": 37
},
"qualifiers": {},
"attributes": {
"id": 37,
"category": 37,
"knowledge_level": 37,
"agent_type": 37,
"original_subject": 37,
"original_object": 37
},
"subject_id_prefixes": {
"CHEBI": 32,
"UNII": 5
},
"object_id_prefixes": {
"NCBIGene": 37
}
},
{
"subject_category": [
"biolink:Drug"
],
"predicate": "biolink:interacts_with",
"object_category": [
"biolink:Gene"
],
"count": 18,
"primary_knowledge_sources": {
"infores:dgidb": 18
},
"qualifiers": {},
"attributes": {
"id": 18,
"category": 18,
"knowledge_level": 18,
"agent_type": 18,
"dgidb_interaction_score": 18,
"dgidb_evidence_score": 18,
"original_subject": 18,
"original_object": 18
},
"subject_id_prefixes": {
"UNII": 13,
"CHEBI": 4,
"DRUGBANK": 1
},
"object_id_prefixes": {
"NCBIGene": 18
}
},
{
"subject_category": [
"biolink:Drug"
],
"predicate": "biolink:affects",
"object_category": [
"biolink:Gene"
],
"count": 15,
"primary_knowledge_sources": {
"infores:dgidb": 15
},
"qualifiers": {
"object_aspect_qualifier": 15,
"causal_mechanism_qualifier": 15,
"object_direction_qualifier": 14,
"qualified_predicate": 14
},
"attributes": {
"id": 15,
"category": 15,
"knowledge_level": 15,
"agent_type": 15,
"dgidb_interaction_score": 15,
"dgidb_evidence_score": 15,
"original_subject": 15,
"original_object": 15
},
"subject_id_prefixes": {
"UNII": 9,
"CHEBI": 4,
"PUBCHEM.COMPOUND": 2
},
"object_id_prefixes": {
"NCBIGene": 8,
"HGNC": 7
}
},
{
"subject_category": [
"biolink:Drug"
],
"predicate": "biolink:directly_physically_interacts_with",
"object_category": [
"biolink:Gene"
],
"count": 12,
"primary_knowledge_sources": {
"infores:dgidb": 12
},
"qualifiers": {},
"attributes": {
"id": 12,
"category": 12,
"knowledge_level": 12,
"agent_type": 12,
"original_subject": 12,
"original_object": 12
},
"subject_id_prefixes": {
"UNII": 9,
"CHEBI": 2,
"PUBCHEM.COMPOUND": 1
},
"object_id_prefixes": {
"HGNC": 7,
"NCBIGene": 5
}
}
],
"edges_summary": {
"total_count": 53672,
"predicates": {
"biolink:interacts_with": 33391,
"biolink:affects": 10855,
"biolink:directly_physically_interacts_with": 9426
},
"primary_knowledge_sources": {
"infores:dgidb": 53672
},
"predicates_by_knowledge_source": {
"infores:dgidb": {
"biolink:interacts_with": 33391,
"biolink:affects": 10855,
"biolink:directly_physically_interacts_with": 9426
}
},
"qualifiers": {
"causal_mechanism_qualifier": 10995,
"object_aspect_qualifier": 10852,
"object_direction_qualifier": 10551,
"qualified_predicate": 10551
},
"attributes": {
"id": 53672,
"category": 53672,
"knowledge_level": 53672,
"agent_type": 53672,
"original_subject": 53672,
"original_object": 53672,
"dgidb_interaction_score": 41832,
"dgidb_evidence_score": 41832,
"publications": 4010
}
}
}
}