{
"@id": "https://stars.renci.org/var/translator/releases/intact/2025_12_09/",
"@type": "sc:Dataset",
"name": "intact",
"description": "A knowledge graph built for the NCATS Biomedical Data Translator project using Translator-Ingests, Biolink Model, and Node Normalizer.",
"license": "MIT",
"url": "https://stars.renci.org/var/translator/releases/intact/2025_12_09/",
"version": "2025_12_09",
"dateCreated": "2025_12_09",
"biolinkVersion": "4.3.5",
"babelVersion": "2025sep1",
"distribution": [
{
"@id": "intact.tar.xz",
"@type": "cr:FileObject",
"contentUrl": "intact.tar.xz",
"encodingFormat": "application/x-xz",
"description": "Compressed tar archive containing the KGX files: nodes.jsonl and edges.jsonl"
}
],
"isBasedOn": [
{
"id": "intact",
"name": "IntAct Reference Ingest Guide",
"description": "IntAct is a curated, open data resource of molecular interactions hosted by EMBL-EBI. It stores experimentally determined molecular interactions, primarily protein\u2013protein interactions, derived from literature curation and direct user submissions. IntAct uses detailed controlled vocabularies (e.g., PSI-MI) to describe experimental details such as interaction type, detection method, and participant roles, enabling consistent representation and downstream reuse of fine-grained interaction evidence.",
"license": "",
"url": [
{
"IntAct main site": "https://www.ebi.ac.uk/intact/"
},
{
"IntAct Download / FTP or bulk access": "https://ftp.ebi.ac.uk/pub/databases/intact/current/psimitab/intact.zip"
}
],
"version": "2025-12-09"
}
],
"schema": {
"nodes": [
{
"category": [
"biolink:Protein",
"biolink:Gene"
],
"count": 17449,
"id_prefixes": {
"NCBIGene": 17449
},
"attributes": {
"name": 17449,
"taxon": 17449,
"equivalent_identifiers": 17449,
"information_content": 17293
}
},
{
"category": [
"biolink:Protein"
],
"count": 10126,
"id_prefixes": {
"UniProtKB": 10126
},
"attributes": {
"name": 10126,
"taxon": 10126,
"equivalent_identifiers": 10126,
"information_content": 7541
}
},
{
"category": [
"biolink:Gene"
],
"count": 48,
"id_prefixes": {
"NCBIGene": 39,
"ENSEMBL": 9
},
"attributes": {
"name": 48,
"taxon": 48,
"equivalent_identifiers": 48,
"information_content": 6
}
}
],
"nodes_summary": {
"total_count": 27623,
"id_prefixes": {
"NCBIGene": 17488,
"UniProtKB": 10126,
"ENSEMBL": 9
},
"attributes": {
"name": 27623,
"taxon": 27623,
"equivalent_identifiers": 27623,
"information_content": 24840
}
},
"edges": [
{
"subject_category": [
"biolink:Protein",
"biolink:Gene"
],
"predicate": "biolink:physically_interacts_with",
"object_category": [
"biolink:Protein",
"biolink:Gene"
],
"count": 746182,
"primary_knowledge_sources": {
"infores:intact": 746182
},
"qualifiers": {},
"attributes": {
"id": 746182,
"category": 746182,
"publications": 746182,
"knowledge_level": 746182,
"agent_type": 746182,
"original_subject": 746182,
"original_object": 746182
},
"subject_id_prefixes": {
"NCBIGene": 746182
},
"object_id_prefixes": {
"NCBIGene": 746182
}
},
{
"subject_category": [
"biolink:Protein"
],
"predicate": "biolink:physically_interacts_with",
"object_category": [
"biolink:Protein",
"biolink:Gene"
],
"count": 72815,
"primary_knowledge_sources": {
"infores:intact": 72815
},
"qualifiers": {},
"attributes": {
"id": 72815,
"category": 72815,
"publications": 72815,
"knowledge_level": 72815,
"agent_type": 72815,
"original_subject": 72815,
"original_object": 72815
},
"subject_id_prefixes": {
"UniProtKB": 72815
},
"object_id_prefixes": {
"NCBIGene": 72815
}
},
{
"subject_category": [
"biolink:Protein",
"biolink:Gene"
],
"predicate": "biolink:physically_interacts_with",
"object_category": [
"biolink:Protein"
],
"count": 66144,
"primary_knowledge_sources": {
"infores:intact": 66144
},
"qualifiers": {},
"attributes": {
"id": 66144,
"category": 66144,
"publications": 66144,
"knowledge_level": 66144,
"agent_type": 66144,
"original_subject": 66144,
"original_object": 66144
},
"subject_id_prefixes": {
"NCBIGene": 66144
},
"object_id_prefixes": {
"UniProtKB": 66144
}
},
{
"subject_category": [
"biolink:Protein"
],
"predicate": "biolink:physically_interacts_with",
"object_category": [
"biolink:Protein"
],
"count": 18072,
"primary_knowledge_sources": {
"infores:intact": 18072
},
"qualifiers": {},
"attributes": {
"id": 18072,
"category": 18072,
"publications": 18072,
"knowledge_level": 18072,
"agent_type": 18072,
"original_subject": 18072,
"original_object": 18072
},
"subject_id_prefixes": {
"UniProtKB": 18072
},
"object_id_prefixes": {
"UniProtKB": 18072
}
},
{
"subject_category": [
"biolink:Protein",
"biolink:Gene"
],
"predicate": "biolink:physically_interacts_with",
"object_category": [
"biolink:Gene"
],
"count": 74,
"primary_knowledge_sources": {
"infores:intact": 74
},
"qualifiers": {},
"attributes": {
"id": 74,
"category": 74,
"publications": 74,
"knowledge_level": 74,
"agent_type": 74,
"original_subject": 74,
"original_object": 74
},
"subject_id_prefixes": {
"NCBIGene": 74
},
"object_id_prefixes": {
"NCBIGene": 61,
"ENSEMBL": 13
}
},
{
"subject_category": [
"biolink:Gene"
],
"predicate": "biolink:physically_interacts_with",
"object_category": [
"biolink:Protein",
"biolink:Gene"
],
"count": 120,
"primary_knowledge_sources": {
"infores:intact": 120
},
"qualifiers": {},
"attributes": {
"id": 120,
"category": 120,
"publications": 120,
"knowledge_level": 120,
"agent_type": 120,
"original_subject": 120,
"original_object": 120
},
"subject_id_prefixes": {
"NCBIGene": 68,
"ENSEMBL": 52
},
"object_id_prefixes": {
"NCBIGene": 120
}
}
],
"edges_summary": {
"total_count": 903407,
"predicates": {
"biolink:physically_interacts_with": 903407
},
"primary_knowledge_sources": {
"infores:intact": 903407
},
"predicates_by_knowledge_source": {
"infores:intact": {
"biolink:physically_interacts_with": 903407
}
},
"qualifiers": {},
"attributes": {
"id": 903407,
"category": 903407,
"publications": 903407,
"knowledge_level": 903407,
"agent_type": 903407,
"original_subject": 903407,
"original_object": 903407
}
}
}
}